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To perform large-scale simulations of the brain or build biologically-inspired cognitive architectures, it is essential to have a succinct and flexible model of spiking neurons. The model should be able to capture the nonlinear dynamical properties of various types of neurons and the nonstationary properties such as the spike-timing-dependent plasticity (STDP). In this paper, we propose a generalized...
Surgical treatment is suggested for seizure control in medically intractable epilepsy patients. Detailed pre-surgical evaluation and lateralization using Magnetic Resonance Images (MRI) is expected to result in a successful surgical outcome. In this study, an optimized pattern recognition approach is proposed for lateralization of mesial Temporal Lobe Epilepsy (mTLE) patients using asymmetry of imaging...
We propose a novel approach for measuring the stationarity level of multichannel time-series. This measure is based on stationarity definition over time-varying spectra and aims to quantify the relationship between local (single-channel dynamics) and global (multichannel dynamics) stationarity. With the purpose of separate among several motor/imagery tasks, we asssume that movement imagination implies...
Compressed sensing (CS) is a promising approach to accelerate dynamic magnetic resonance imaging (MRI). Most existing CS methods employ linear sparsifying transforms. The recent developments in non-linear or kernel-based sparse representations have been shown to outperform the linear transforms. In this paper, we present an iterative non-linear CS dynamic MRI reconstruction framework that uses the...
Day to day variability and non-stationarity caused by changes in subject motivation, learning and behavior pose a challenge in using local field potentials (LFP) for practical Brain Computer Interfaces. Pattern recognition algorithms require that the features possess little to no variation from the training to test data. As such models developed on one day fail to represent the characteristics on...
Non-Structural Protein 1 (NS1) antigen has been recognized as a biomarker for diagnosis of flavivirus viral infections at early stage. Surface Enhanced Raman Spectroscopy (SERS) is an optical technique capable of detecting up to a single molecule. Our previous work has established the Raman fingerprint of NS1 with gold as substrate. Our current study aims to classify NS1 infected saliva samples from...
Clinical decision support systems use image processing and machine learning methods to objectively predict cancer in histopathological images. Integral to the development of machine learning classifiers is the ability to generalize from training data to unseen future data. A classification model's ability to accurately predict class label for new unseen data is measured by performance metrics, which...
Recent studies pointed out possible shape modifications of the Probability Density Function (PDF) of surface electromyographical (sEMG) data according to several contexts like fatigue and muscle force increase. Following this idea, criteria have been proposed to monitor these shape modifications mainly using High Order Statistics (HOS) parameters like skewness and kurtosis. In experimental conditions,...
We present a fast algorithm for automatic segmentation of white matter fibers from tractography datasets based on a multi-subject bundle atlas. We describe a sequential version of the algorithm that runs on a desktop computer CPU, as well as a highly parallel version that uses a Graphics Processing Unit (GPU) as an accelerator. Our sequential implementation runs 270 times faster than a C++/Python...
This study aims classification of phosphorus magnetic resonance spectroscopic imaging (31P-MRSI) data of human brain tumors using machine-learning algorithms. The metabolite peak intensities and ratios were estimated for brain tumor and healthy 31P MR spectra acquired at 3T. The spectra were classified based on metabolite characteristics using logistic regression and support vector machine. This study...
This study investigated nonlinear patterns of coordination, or synergies, underlying whole-hand grasping kinematics. Prior research has shed considerable light on roles played by such coordinated degrees-of-freedom (DOF), illuminating how motor control is facilitated by structural and functional specializations in the brain, peripheral nervous system, and musculoskeletal system. However, existing...
We propose a new Kernel-based Atlas Image Selection computed in the Embedding Representation space (termed KAISER) aiming to support labeling of brain tissue on 3D magnetic resonance (MR) images. KAISER approach provides efficient feature extraction from MR volumes based on an introduced inter-slice kernel (ISK). Thus, using the ISK matrix eigendecomposition, the inherent structure of data distribution...
Marker-less optical head-tracking constitutes a comfortable alternative with no exposure to radiation for realtime monitoring in radiation therapy. Supporting information such as tissue thickness has the potential to improve spatial tracking accuracy. Here we study how accurate tissue thickness can be estimated from the near-infrared (NIR) backscatter obtained from laser scans. In a case study, optical...
In this paper, we propose a method for detecting arrhythmia in single-lead electro-cardiogram (ECG) signal. By applying a sequence of pre-processing steps (filtering, baseline correction), beat classification and rhythm identification, six different beat-types and four abnormal rhythms are detected. Beat classification uses fast Fourier transform (FFT) as the feature and a support vector machine (SVM)...
The neuroimaging data typically has extremely high dimensions. Therefore, dimensionality reduction is commonly used to extract discriminative features. Kernel entropy component analysis (KECA) is a newly developed data transformation method, where the key idea is to preserve the most estimated Renyi entropy of the input space data set via a kernel-based estimator. Despite its good performance, KECA...
This paper presents a new method for discriminating centroblast (CB) from non-centroblast cells in microscopic images acquired from tissue biopsies of follicular lymphoma. In the proposed method tissue sections are sliced at a low thickness level, around 1–1.5um, which provides a more detailed depiction of the nuclei and other textural information of cells usually not distinguishable in thicker specimens,...
Numerous recent studies have aimed to improve myoelectric control of prostheses. However, the majority of these studies is characterized by two problems that could be easily fulfilled with recent resources supplied by the scientific literature. First, the majority of these studies use only intact subjects, with the unproved assumption that the results apply equally to amputees. Second, usually only...
To support 3D magnetic resonance image (MRI) analysis, a marginal image similarity (MIS) matrix holding MR inter-slice relationship along every axis view (Axial, Coronal, and Sagittal) can be estimated. However, mutual inference from MIS view information poses a difficult task since relationships between axes are nonlinear. To overcome this issue, we introduce a Tensor-Product Kernel-based Representation...
Extravasation during intravenous (IV) infusion is a common secondary effect with potentially serious clinical consequences. The correct positioning of the needle in the vein may be difficult to confirm when no blood return is observed. In this paper, a novel method is proposed for the detection of extravasation during infusion therapy. A small volume of a sodium bicarbonate solution is administrated...
The use of a small number of surface electromyography (EMG) channels on the transradial amputee in a myoelectric controller is a big challenge. This paper proposes a pattern recognition system using an extreme learning machine (ELM) optimized by particle swarm optimization (PSO). PSO is mutated by wavelet function to avoid trapped in a local minima. The proposed system is used to classify eleven imagined...
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