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Glaucoma is a leading cause of permanent blindness. Retinal imaging is useful for early detection of glaucoma. In order to evaluate the presence of glaucoma, ophthalmologists may determine the cup and disc areas and diagnose glaucoma using a vertical optic cup-to-disc (C/D) ratio and a rim-to-disc (R/D) ratio. Previously we proposed a method to determine cup edge by analyzing a vertical profile of...
Various methods for detecting optic disc and macula in fundus images have been developed. Our aim is to propose a fairly easy method for detecting both features jointly. This is achieved by first correcting inhomogenous luminosity using a polynomial approximation of the background of the images. Secondly, the use of the cross-correlation in the frequency domain between the images and a steerable template...
In recent years, there has been increasing interest in the use of automatic computer-based systems for the detection of eye diseases such as glaucoma, age-related macular degeneration and diabetic retinopathy. However, in practice, retinal image quality is a big concern as automatic systems without consideration of degraded image quality will likely generate unreliable results. In this paper, an automatic...
Structural changes in the choroid, a layer located between the retina and sclera, could indicate various vision impairments. Consequently, ophthalmologists inspect optical coherence tomography (OCT) scans of the posterior section of the eye towards making diagnosis. With a view to assist diagnosis, we propose an automated technique for segmentation of the choroid layer. Specifically, we detect the...
Intracoronary optical coherence tomography (OCT) is a new invasive imaging system which produces highresolution images of coronary arteries. Preliminary data suggests that the atherosclerotic disease can be detected from the intracoronary OCT images. However, manual assessment of the intracoronary OCT images is time-consuming and subjective. In this work, we present an automatic atherosclerotic disease...
An integrated instrument is being developed to study live cardiac trabeculae, which is capable of stimulating the muscle under controlled conditions while measuring the heat production, force, and sarcomere length distribution. To improve the accuracy of estimation of stress, strain, and volumetric heat production, the geometry of the muscle must be known. A spectral domain optical coherence tomography...
Speckle noise is problematic in optical coherence tomography (OCT) and often obscures the structure details. In this paper, we propose a new method to reduce speckle noise from multiply scanned OCT slices. The proposed method registers the OCT scans using a global alignment followed by a local alignment based on global and local motion estimation. Then low rank matrix completion using bilateral random...
The study of the mechanical and environmental factors that regulate a fundamental event such as fertilization have been subject of multiple studies. Nevertheless, the microscopical size of the spermatozoa and the high beating frequency of their flagella (up to 20 Hz) impose a series of technological challenges for the study of the mechanical factors implicated. Traditionally, due to the inherent characteristics...
Optical projection tomography (OPT) is a very important imaging tool for a mesoscopic-scale. It can provide three dimensional (3D) transmission and emission imaging. However, high-resolution OPT is limited in depth of field (DOF) due to a high numerical aperture, which causes a poor performance of OPT in imaging large samples. Moreover, it is difficult to tune the focus plane (FP) to a fixed position...
This paper presents a coarse-to-fine combined method for dealing with large displacement situations caused by low speed of frame rate in microscopic video sequences. Motion image estimation method utilizes the modified block matching method based on image warping to perform a wide range of changes in the amount of search comparison, and then using the optical flow method to fine adjustment pixel by...
Ultrasound imaging is an effective way to measure the muscle activity in electrical stimulation studies. However, it is a time consuming task to manually measure pennation angle and muscle thickness, which are the benchmark features to analyze muscle activity from the ultrasound imaging. In previous studies, the muscle features were measured by calculating optical flow of the pennation angle by using...
Accurate tracking of the myocardium tissues in tagged Magnetic Resonance Images (MRI) is essential for evaluating the cardiac function. Current tracking methods utilize either the image intensity or the image phase as landmarks that can be tracked. In either case, the performance is vulnerable to the image quality and the fading of the tag lines. In this work, we propose a hybrid optical flow tracking...
We report the development of a microfluidic flow-templating platform with multi-modal characterization for studies of biofilms and their precursor materials. A key feature is a special three inlet flow-template compartment, which confines and controls the location of biofilm growth against a template wall. Characterization compartments include Raman imaging to study the localization of the nutrient...
A low-cost alternative to the direct ophthalmoscope, a simple optical adapter for a smartphone, is described. It can overcome many of the technical challenges of fundoscopy, providing a high-resolution view of the retina through an un-dilated pupil. This can be used in locations with limited diagnostic resources to detect conditions such as glaucomatous optic neuropathy. Comparison of optic nerve...
Photon scatter is the dominant light transport process in biological tissue and is well understood to degrade imaging performance in near-infrared diffuse optical tomography. Measurement of photons arriving at early times following a short laser pulse is considered to be an effective method to improve this limitation, i.e. by systematically selecting photons that have experienced fewer scattering...
The cardiac excitation propagation during arrhythmia shows a three-dimensional complex excitation behavior. Numerous optical measurements of the propagation and action potentials of the cardiac muscles have been made to elucidate the detailed arrhythmia phenomenon. The conventional optical measurement system mainly observes the action potential signal of the epicardium, and the endocardial signal...
Precise and noninvasive measurement of retinal oxygen metabolic rate is important for retinal pathological investigations as well as retinal disease detection, which has not been achieved until recently. Here, we quantified retinal oxygen metabolic rate in rats by combining photoacoustic ophthalmoscopy with spectral domain-optical coherence tomography. We employed multi-wavelength photoacoustic ophthalmoscopy...
Glaucoma is a chronic neurodegenerative disease characterized by loss of retinal ganglion cells, resulting in distinctive changes in the optic nerve head (ONH) and retinal nerve fiber layer (RNFL). Important advances in technology for non-invasive imaging of the eye have been made providing quantitative tools to measure structural changes in ONH topography, a crucial step in diagnosing and monitoring...
Optical coherence tomography (OCT) is able to provide high resolution volumetric data for biological tissues. However, the field of view (FOV) of OCT is sometimes smaller than the field of interest, which limits the clinical application of OCT. One way to overcome the drawback is to stitch multiple 3D volumes. In this paper, we propose a novel method to register multiple overlapped volumetric OCT...
Graphics processing units are increasingly being used for scientific computing for their powerful parallel processing abilities, and moderate price compared to super computers and computing grids. In this paper we have used a general purpose graphics processing unit to process adaptive-optics optical coherence tomography (AOOCT) images in real time. Increasing the processing speed of AOOCT is an essential...
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