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The Human Protein Atlas (HPA) is a repository of location patterns of about 11000 proteins within tissues and cell lines. In this work we summarize some of our current work on analyzing immunohistochemical images of proteins within 7 distinct tissues. Firstly, we present our efforts to analyze spatial point patterns of protein staining and determine protein subcellular location from image-derived...
An adaptive fuzzy c-means (AFCM) clustering based algorithm was developed and applied to the segmentation and classification of multi-color fluorescence in situ hybridization (M-FISH) images, which can be used to detect chromosomal abnormalities for cancer and genetic disease diagnosis. The algorithm improves the classical fuzzy c-means (FCM) clustering algorithm by introducing a gain field, which...
With the development of DNA microarrys technology, it is very important to classify the different tumor types correctly in cancer diagnosis and drug discovery. In this paper, we discuss how to use the nonnegative matrix factorization (NMF) to extract features and illustrate how to adopt classification model to improve the classification accuracy. For the DNA microarrys, the gene expression data is...
Location proteomics is concerned with the systematic analysis of the subcellular location of proteins. In order to perform comprehensive analysis of all protein location patterns, automated methods are needed. With the goal of extending automated subcellular location pattern analysis methods to high resolution images of tissues, 3D confocal microscope images of polarized CaCo2 cells immunostained...
Gene expression is the fundamental control of the structure and functions of the cellular versatility and adaptability of any organisms. The measurement of gene expressions is performed on images generated by optical inspection of microarray devices which allow the simultaneous analysis of thousands of genes. The images produced by these devices are used to calculate the expression levels of mRNA...
Multichannel chromosome image acquisition is used for cancer diagnosis and research on genetic disorders. This type of imaging, apart from aiding the cytogeneticist in several ways, facilitates the visual detection of chromosome abnormalities. However, chromosome misclassification errors result from different factors, such as uneven hybridization, spectral overlap among fluors, and biochemical noise...
M-FISH (multicolor fluorescence in situ hybridization) is a recently developed cytogenetic technique for cancer diagnosis and research on genetic disorders which uses 5 fluors to label uniquely each chromosome and a fluorescent DNA stain. In this paper, an automated method for chromosome classification in M-FISH images is presented. The chromosome image is initially decomposed into a set of primitive...
M-FISH (multicolor fluorescence in situ hybridization) is a recently developed cytogenetic technique for cancer diagnosis and research on genetic disorders which uses 5 fluors to label uniquely each chromosome and a fluorescent DNA stain. In this paper, an automated method for chromosome classification in M-FISH images is presented. The chromosome image is initially decomposed into a set of primitive...
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