Phosphoenolpyruvate carboxylase (PEPC) from developing castor oil seeds (COS) exists as two distinct oligomeric isoforms. The typical class‐1 PEPC homotetramer consists of 107‐kDa plant‐type PEPC (PTPC) subunits, whereas the allosterically desensitized 910‐kDa class‐2 PEPC hetero‐octamer arises from the association of class‐1 PEPC with 118‐kDa bacterial‐type PEPC (BTPC) subunits. The in vivo interaction and subcellular location of COS BTPC and PTPC were assessed by imaging fluorescent protein (FP)‐tagged PEPCs in tobacco suspension‐cultured cells. The BTPC‐FP mainly localized to cytoplasmic punctate/globular structures, identified as mitochondria by co‐immunostaining of endogenous cytochrome oxidase. Inhibition of respiration with KCN resulted in proportional decreases and increases in mitochondrial versus cytosolic BTPC‐FP, respectively. The FP‐PTPC and NLS‐FP‐PTPC (containing an appended nuclear localization signal, NLS) localized to the cytosol and nucleus, respectively, but both co‐localized with mitochondrial‐associated BTPC when co‐expressed with BTPC‐FP. Transmission electron microscopy of immunogold‐labeled developing COS revealed that BTPC and PTPC are localized at the mitochondrial (outer) envelope, as well as the cytosol. Moreover, thermolysin‐sensitive BTPC and PTPC polypeptides were detected on immunoblots of purified COS mitochondria. Overall, our results demonstrate that: (i) COS BTPC and PTPC interact in vivo as a class‐2 PEPC complex that associates with the surface of mitochondria, (ii) BTPC’s unique and divergent intrinsically disordered region mediates its interaction with PTPC, whereas (iii) the PTPC‐containing class‐1 PEPC is entirely cytosolic. We hypothesize that mitochondrial‐associated class‐2 PEPC facilitates rapid refixation of respiratory CO2 while sustaining a large anaplerotic flux to replenish tricarboxylic acid cycle C‐skeletons withdrawn for biosynthesis.